The School of Biological Sciences Newsletter

May 2000 issue

From the HoS

 

 

From the Head of School

 


In recent weeks there has been an exciting change affecting the teaching of molecular biology. As you probably know, this University was very successful in gaining new science lectureships in several areas from the DETYA scheme to improve science teaching in Universities. One of these areas was a new molecular biotechnology degree, which gained us a group of lectureships, including one in Bioinformatics, which will be located in the School of Biological Sciences.

The initiation of the new Molecular Biotechnology degree has also brought about a solution to the long-standing problem of overlap in the teaching of molecular biology. Until now molecular biology has been taught, separately, in intermediate courses within Biological Sciences, Biochemistry and Microbiology, and many students have covered the same material twice. Now these three departments have agreed to combine to teach a single set of intermediate units in molecular biology and genetics for all students taking biological subjects in the Faculty of Science. Following the initial decision to teach a combined course Ron Skurray, Peter Reeves, Merlin Crossley and Gareth Denyer (in his role as Chair of the Faculty Undergraduate Studies Committee) spent many very fruitful hours designing the new units of study, which have now been approved by the Faculty.

The first of the new units will be a compulsory core component for all students in life sciences in the Faculty of Science (except those in B.Med.Sci., who already take an integrated second year unit in this area). There will be two units of study in each semester - a four credit point, theory-only option and an eight credit point version with laboratory classes.

All students taking Biology in second year will have to take at least the first four credit point, "dry" unit of the new Molecular Biology and Genetics stream. The only exception will be those students taking our "dry" courses in Plants and Animals, as these units do not lead to third year study. The first semester theory-only unit will contain almost all the material we had put into our existing second semester core in molecular genetics. However, the population genetics section will not be included, and we will need to put that material elsewhere in our courses. The first semester Molecular Biology and Genetics unit will replace the existing Biochemistry unit in molecular biology (BCHM 2001) and the second semester unit will replace our Molecular Biology and Genetics (BIOL 2005). Biochemistry, with some help from Biological Sciences and Microbiology, will teach the first semester unit and Biological Sciences, with some help from the other departments, will teach the second semester unit. We expect that there will be very large numbers of students taking these units - possibly as many as 500 in the second semester unit for which we are responsible. Thus implementing our unit will be an enormous task for those involved.

The Teaching Committee has decided to retain the first semester Core on Evolution and Phylogeny as it is and to continue to teach it in first semester. Unfortunately, a consequence of the Faculty-wide core is that our new second semester core on molecular biology and genetics will be taught only once, as the new units will start next year. I hope that the experience of putting together our core course for second semester this year will help in the writing of the core course for the even larger number of students next year. The corequisites and prerequisites for our intermediate units have been rewritten to include Molecular Biology and Genetics.

I believe this is a great step forward in the teaching of biology within the Faculty and also in bringing the biological departments together. On the same theme, I was recently involved in a discussion of potential closer links with Agriculture in teaching; the only decision reached was to explore this further, particularly in the areas of entomology and of plant physiology and biochemistry.

Finally (but not least), we had a very constructive meeting of staff to discuss the proposed amalgamations of workshops with Associate Professor Don Taylor (Associate Dean, Resources). The importance of the way Basil, Sam and Andrew are integrated into team work throughout the School and the huge role they have in supporting research and teaching infrastructure were made very clear, and new solutions were suggested. I will, of course, continue to put forward the strong consensus that emerged from the meeting. Unfortunately, it will probably be some time until a final decision is made at the College level.

Roz Hinde

 

Head of School's Report


Jun '00
HEAD OF SCHOOL'S REPORT


Staffing

Academic
Associate Lectureship/Lectureship (vice Harvey)
The University Selection Committee met on 18 May. An offer has been made.

Associate Lectureship/Lectureship (vice Danckwerts)
A date has not yet been set for interviews/presentations.

General
Mr. Mark Ahern has been appointed to the continuing position of HEO 6 (Resources Officer), from 18 May 2000.

The Administrative Assistant position (vice Morales) has been advertised again, and closed on 11 May.

Dr Adrienne Grant has been appointed to the part-time position of Research Fellow (School-funded - Hinde) from 1 May to 31 December (in the first instance).

Honorary Appointments

Visiting Scholar
Professor S Karpov (nominated by Professor Patterson)

 

 

Report on Semester 1 Intermediate Core Course

Report on Semester 1 Intermediate Core Course


The Semester 1 Intermediate Biology Core ran for the first time this year, with an enrollment of 257 students (41 students were enrolled in more than one Intermediate Unit of Study [overlap students]). The Core lectures covered evolutionary theory (Rick Shine); phylogenetics and systematics (Murray Henwood); and the evolution of eukaryotes and multicellularity (Alastair Simpson). (Alastair should be congratulated and sincerely thanked by the School for his contribution, as a graduate student, of four of the lectures.) Practicals and tutorials expanded on lecture material and also included issues of biodiversity and conservation; progress and complexity; and species concepts. Skills training included statistical analysis (using Excel), library information skills (using library catalogues and literature databases), microscopy and scientific writing. The Core was assessed by an examination in Week 5. Overlap students completed a journal review assignment to replace the core exam for one of their Units of Study.

Students were provided with information about the Core in a separate Core manual, which incorporated the Intermediate Skills Manual, as well as by email, Web and a Core noticeboard. Rob Mackay-Wood has created a student registration Website, where students were required to register their enrollment and email details. This database allowed associate lecturers to extract email address lists for their students.


The response to the Core from a survey of students was generally positive: the majority of students believed the topics were relevant to their own Unit of Study; comprised necessary knowledge for a practicing biologist; and they would recommend the Core to other students. Practicals were considered relevant to the course and skills training was considered valuable. The most serious problem encountered was the number of timetable clashes, which required lectures to be taped and made available on Closed Reserve. Audio files of lectures were ultimately made available on the Ashby iMacs.

It is too early to judge the impact of the Core on the remainder of the semester or Senior units: survey questions relating to the Core will be repeated in the surveys for each Unit of Study at the end of Semester 1. At a meeting of all Core teaching staff it was unanimously agreed that we should continue with the Core on the basis of this year's experience. There was general agreement within the academic staff delivering the Core and the students taking the Core that the content was worthwhile, interesting and relevant to their study of Biology. There was no overall saving of staff time, as the administrative load on associate lecturers was immense, but we would expect this to decrease after the first year.

Elizabeth May.

 

 

Building Update

Here is a brief update on the projected handover dates for various rooms in A08 and A12

BUILDING WORKS REPORT May 2000

Rooms Approximate date available

Building A08

Aquarium areas Handed over
205 cold room Near completion
219, 219A, 219B 19 May
319, 319A Glenda 19 May
Herbarium level 3 26 May
329, 330, 331 19 May
Level 4 offices 440-447 19 May

Building A12

103 Herbarium - new lab Start end of May then 4-6 weeks
127 A, B toilets Handed over
128 Wet prep Handed over
204-207 AV and computers Handed over
131 Haswell Partially handed over, awaiting exhaust
241, 244 research labs 26 May

Michael Joseph
PCG

 

Flowers, balloons and painted trams - popular science in action

Jenny Saleeba

It was a pleasure to attend the Tall Poppy Dinner 2000 last Thursday in Melbourne which "celebrates the efforts of all Tall Poppies" in science. I was a guest at the dinner of Dr Geoff Brooke, Executive Director of Rothschild Bioscience Managers Limited and enjoyed the company of several CEOs of Australian biology startup companies funded by Rothschild. It was an interesting intellectual stretch to consider the very applied nature of the projects these companies are undertaking, and projects that are anticipated to be financial windfalls to boot. Another type of intellectual stretch offered by the dinner was to witness the speeches of the Hon Dr Michael Wooldridge, the Hon Dr David Kemp and the Hon John Thwaites. Although short, five minutes would be expected to offer a lot more content than the usual 10 second sound bites one hears on TV, but they didn't. However, the ministers did tell a couple of good jokes, including one from Wooldridge about radiologists.

This year's awards were of particular interest because of the announcement of the Cavalcade of Scientists of the 20th century. The idea behind this retrospective of the century was to choose a scientific highlight from each of the ten decades. Unfortunately the panel got stuck with eleven outstanding achievements and settled on a cricket team's worth of Poppies rather than ten. The awards represented a wide range of fields of science and went to William Farrer, Agriculturist and Wheat Breeder, Lawrence Hargrave, Aviation Pioneer and Inventor, Thomas Bancroft, Tropical Medicine Physician and Natural Historian, Sir Douglas Mawson, Geologist and Antarctic Explorer, Sir Ian Wark, Chemist and Mineralogist, Joseph Pawsey, Radio Astronomer and Radio Physicist, Graeme Clark, Otolaryngologist, Allan Snyder, Optical Physicist and Visual Scientist, Suzanne Cory and Jerry Adams, Molecular Geneticists, Fiona Stanley, Pediatrician and Epidemiologist and J Robin Warren and Barry Marshall, Pathologist and Gastroenterologist.

Also announced were seventeen Young Tall Poppies from Victoria. Rather disappointingly they all research medical topics. Perhaps the campaign needs some input from non-medical science (www.tallpoppies.net.au).

In order to attract attention to science the Tall Poppy Campaign advertises the award winners on the sides of a Melbourne tram and flies a hot air balloon, carrying the poppy symbol, over Australian cities. It is fascinating where a career in science may take you. It appears the sky is the limit.

 

The Institute of Wildlife Research 10th Anniversary Celebration

THE INSTITUTE OF WILDLIFE RESEARCH CELEBRATES ITS 10th ANNIVERSARY

Most of you will have heard of the Institute of Wildlife Research, but unless you are member (about 10 of you from this school), you may know little about who we are and what we do.

The IWR is a consortium of wildlife biologists based primarily in Sydney, including 20 members from our school, New South Wales National Parks and Wildlife, The Australian Museum, The Royal Botanic Gardens, and recently, the University of New South Wales. Our Director is Chris Dickman, Associate Director Peter Myerscough and Chairman Ian Hume.

Our membership is growing continually, and the size of our projects grows with it. Our activities include public awareness campaigns, research projects and consultancy. Over 40 postgraduate students have graduated through the institute, and we currently have an equal number in progress. Students of IWR members are automatically student members. We have collectively produced over 300 scholarly articles and raised well over one million dollars in research funds since our inception. Our consultancy and research projects have included a national review of problems associated with cats in Australia, species recovery plans for threatened waterbirds, the effects of urbanisation on arthropods, population modeling in the conservation of plants, and the role of mycorrhiza in revegetation of disused waste dumps.

As our capacity to take on larger projects grows, it is incumbent on us to increase our profile within the scientific, public and public service sectors of our community. On the 10th of May, we held an event at the Holme Building for about 80 people. Invitees included those who have donated funds, supported our research or collaborated with us in the past, as well as those who might wish to do so in the future. The day included talks by Institute members, with a morning tea where we got to know each other. It was a great success, and has spawned considerable discussion, leading to future meetings, contracts and considerable good will. The champagne wasn't bad either...

I would like to extend my personal thanks to those who helped prepare and run the event: Max, Bobby, Tanya, Sylvia, Matthew, Michelle, Adele, Errol, Hamlet and others, but especially Lisa Chambers who put up with enormous strain to get everything ready and going smoothly on time. It was well worth the effort, and everyone involved can be happy with the result.

Eric Dorfman
Secretary, IWR

 

SOBScript

 

Congratulations are due to two of last years honours students. Yvonne Devilla and Deborah Barton both recently graduated with First class honours and the University Medal. Yvonne investigated the Reproductive Ecology of Trachymene incisa (Apiaceae). Trachymene incisa is a native herb in the carrot family, which is commonly found at Agnes Banks Nature Reserve and Myall Lakes National Park. Specifically, Yvonne looked at the pollination biology and the breeding system of this species. Deborah investigated the movement of nuclei within pith parenchyma cells of Coleus blumei stems.

 

Patsy Armati returned from a neurology conference in San Diego where the highlight of the meeting was a Keynote address by Seymour Benzer entitled "The Neurology of Drosophila". This was truly a tour de force and the pathology of numerous drosophila mutants was indistinguishable from a number of well known human diseases including Creutzfeld Jacob disease. Apart from his fame as a geneticist, his sense of humour shone through when he pointed out to 2,000 neurologists and scientists (yes, that right 2,000) that whereas neurologists name diseases after themselves, geneticists had more fun and used more imagination naming the mutants..... It's worth rereading Science, March, 24, Vol. 287. Patsy was also one of seven scientists invited to present their research at a small GlaxoWellcome Symposium of 17 people, held in Melbourne last week. Apart from the exciting science, the couple of days at the Park Hyatt more than made up for the early morning starts.

 

First Year Biology has been active over the last couple of months, hosting a group of Science teachers from the Science Alliance. Talks were presented by Peter McGee and Murray Thomson, and Sue Franklin chaired a discussion on assessment. First Year also hosted a University Careers Advisers and Teachers Day (Life Sciences Option) when 35 careers advisors attended a 2.5 hr session, organised by Sue Franklin, on the transition to university ( Mary Peat), careers in human nutrition, psychology and biology and web resources for teachers (Uniserve Science).

 

 

 

On horns!

 

Monday, 7.40 am. I write this in a VW Santana 2000 in Wuhan (People's Republic of China). We are on the motorway to the new airport. We have just gone through a 5 km/hour sign at 90 and are accelerating towards the queues of cars at the toll gates. We swerve to the right, and bypass all booths. We come out the other side doing 130 still in the 5 zone.

This story begins in Kunming three days ago. Kunming is in Yunnan province of Shangri-La fame. At the airport, the plane broke. It was a Boeing 737. We were delayed 4 hours.

The airport I arrived at in Wuhan is the number two airport. It doubles as a rubbish tip. Broken bricks, plastic bags. Here my host meets by accident - his niece. The improbability of that event took some time to dawn on me. There is a line of army planes. The only officious man I encountered in China told me that I could not take a picture of them. I had the best camera in the world with me, so I got the picture anyway. The microscope which had been shipped from Sydney for the training course went to the goods airport. It was stuck in customs. It takes over an hour to get from one airport to the other (cities in China are not small - Peking has a population almost the same as Australia). The customs close at 4.00. My time of arrival was 3.30. We could not get there before it closed on that day. It was Friday. The customs is also closed on Saturday. The customs is also closed on Sunday. So, a workshop that is supposed to start on a Friday is likely to be delayed to Tuesday.

I called upon my training as a professor of the School of Biological Sciences of the University of Sydney. Without hesitation - I throw a tantrum.

The result. We establish that customs open at 8.00 on Monday. At 7.00 this morning I was picked up by an Institute Driver. The head of the external relations department is already in the car. We are off to the customs to get the gear before we lose any more time. Our driver does not smile. I have seen this before - when I was taken to talk to big brass of the First Military Medical University. It is a state of inner peace, of readiness for anything that might to be. But, this is new to me, and I was about to be introduced to some of the advanced road skills of the Chinese.

In Wuhan (unlike Quangzhou) the horn is used - a lot. It is used like a steering wheel, as a device to deal with trucks, buses, trolley-buses, motorbikes, three-wheeler motorised rickshaws, bicycles (with two or three people per bike) and people walking on the road. Also Citroen taxis, VWs and some kind of chinese papier-mâché car decked out with spoilers and air dams like a Trabant GT. The principle seems to be that all people gain the same amount of respect. An old man pulling a barrow can be like a rock in a stream and the traffic swirls around and past. In our car, equity takes a different flavour. The horn means, you are all equal. You are all nothing. I will not be slowing down - so you'd better think twice about occupying that space which is about to become mine. And please don't think that the pedestrian crossing will give you any protection.

After half an hour of my introductory tutorial, I find this car has a second horn. It has a lower throaty noise. The switch is hidden under the dash. It is used for special messages - aimed at those oblivious to the first signals. The first time it was used it was aimed at a small child. It said, 'I don't care if you are only 7 years old and trying to negotiate 8 lanes of rush hour traffic on your own, if you are not somewhere else in 2 seconds you will be a flat seven year old!'

It was the trolley-bus incident which let me know that we were in the hands of someone special. The bus had lost one of its arms. The driver was trying to pull it back into place. A lady passenger, clambered onto the top of the bus, jumped up grabbed the arm and swung it round. But another trolley tried to go round the outside and couldn't make it. A big truck coming towards us evaded the jam but met another big truck coming towards him on his side of the road (nothing unusual there) Our driver is however not in the mood for waiting. He chooses the inside path. But, we find that it was a parked van that caused the trolley bus to swing out too far and loose its connection. So, that route being blocked, we go along the pavement. No hesitation. Of course, we use the horn to scatter the pedestrians. Some of those who were quietly reading their papers or having breakfast indicate that they are miffed.

I have yet to understand the roundabouts. I think it is priority to right - unless your concept of equity is that of our driver. Again, the special horn gets used. We force our way through the roundabout, hang a sharp right through a red light, and run straight into hundred of bicyclists crossing the road. The special horn says - you may think you have the right of way and you may think that being on a pedestrian crossing and hidden among 20 other cyclists gives you the option of ignoring me, but in two seconds I am going to be on the other side, whether you stay there or not. And he was.

By now I understand why the best etiquette when being a passenger in a car like this is to be unseeing - to stare straight ahead. Unfortunately, my mind wanders. What will happen when we encounter a car more officious than ours. Our military driver in Quangzhou (where my faux pas was to open up my computer which has the helicopter attack from 'Apocalypse Now' as its screen saver in front of 14 three and four star colonels and generals) - managed to get a large articulated lorry to back into a solid mass of traffic).

My mind is brought back to Wuhan by a movement of the drivers' hand. Shit, he's putting on his seat belt. We have just got on to the motorway to Tianhu airport. We are doing 140 km/hr. Everything must move aside.

Then I hear the police hee-haw. He's obviously gone a bit too far. I look behind for the blue and white car with the flashing lights. No-one there. Then it dawns on me. It's us, we have a third horn. We fly along the road scattering all and sundry. Was the tantrum really the best solution to the problem of the microscope? I notice in the pocket of the door, there are pieces of card with big letters. For the first time I see that one of these is on the dash. It establishes our authority. It says 'Chinese Academy of Sciences'. Strangely, I am at peace. My mind thinks, if only Australia were like this.

We arrive at Customs. There is no-one here. They open in another hour.

 

D. J. Patterson