David J. (Paddy) Patterson

Paddy has interest in the diversity, evolution, and classification of protists. He is involved in the promotion of biodiversity information using the internet. He is a member of the International Commission of Zoological Nomenclature.

Why Protsville ...

• Telephone: 612 9351 2438
  FAX : 612 9351 4119
  EMAIL: paddy@mail.usyd.edu.au

SELECTED PUBLICATIONS

• Al Qassab, S., Lee, W. J., Murray, S., and Patterson,. D. J. (2002). Flagellates from stromatolites and surrounding sediments in Shark Bay, Western Australia. Acta Protozoologica, 41: 91-144 126.
• Bernard, C., Simpson, A. G. B. and Patterson, D. J. (2000). Some free-living flagellates from anoxic sediments. Ophelia, 52, 113-142.
• Bernard, C., Simpson, A.G.B. and Patterson, D.J. (1997). An ultrastructral study of a free-living retortamonad, Chilomastix cuspidata (Larsen & Patterson, 1990) n. comb. (Retortamonadida, Protista) Europ. J. Protisol. 33, 254-265.
• Brugerolle, G. and Patterson, D. J. (1990). A cytological study of Aulacomonas submarina Skuja, a heterotrophic flagellate with a novel ultrastructural identity. European Journal of Protistology, 25: 191-199
• Brugerolle, G. and Patterson, D. J. (1997). The ultrastructure of Trimastix convexa Hollande, an amitochondriate anaerobic flagellate with a previously undescribed organisation. Europ. J. Protist. 33, 121-130.
• Brugerolle, G. and Patterson, D.J. (2001). Ultrastructure of Joenina pulchella Grassi, 1917 (Protista, Parabasalia), a reassessment of evolutionary trends in the parabasalids, and a new order Cristamonadida for devescovinid, calonymphid and lophomonad flagellates. Organisms Diversity and Evolution, 1: 147-160.
• Brugerolle, G. & Patterson, D. J. (2002). Order Pelobiontida Page, 1976. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 1097- 1103.
• Buck, K. R., Barry, J. P. and Simpson, A. G. B. (2000). Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Protistology36, 117-126
• Delvinquier, B. L. J. and Patterson, D. J. (1993). The Opalines. pp 247-325 in Kreier, J.P. and Baker, J.R. Parasitic Protozoa (second edition), Volume 3. Academic Press, San Diego.
• Delvinquier, B. L. J. & Patterson, D. J. (2002). Order Slopalinida. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 754 - 759. 1
• Edgcombe, V.P., Simpson, A. G. B., Amaral Zettler, L., Nerad, T.A., Patterson, D.J., Holder, M. E. and Sogin, M. L. 2002. Pelobionts are degenerate protists: insights from molecules and morphology. Molecular Biology and Evolution, 19:978-982. 127.
• Edgcomb, V., Viscogliosi, E., Simpson, A.G.B., Delgado-Viscogliosi, P., Roger, A. and Sogin, M. (1998). New insights into the phylogeny of trichomonads inferred from small subunit rRNA sequences. Protist 149, 359-366.
• Ekebom, J., Patterson, D. J. and Vors, N. (1995-96) Heterotrophic flagellates from Coral Reef Sediments. Arch. Protistenkd. 146:251-272.
• Ekelund, F. and Patterson, D.J. Some Heterotrophic Flagellate from a Cultivated Garden Soil in Australia. Arch. Protistenkd 148 (1997):461-478.
•   Fenchel, T. and Patterson, D. J. (1988). Cafeteria roenbergensis nov. gen., nov. sp., a heterotrophic microflagellate from marine plankton. Marine Microbial Food Webs, 3: 9-19.
• Hausmann, K. and Patterson, D. J. (1983). Taschenatlas der Einzeller. Kosmos Verlag, Stuttgart.
• Heep, T., Rohozinski, J. Simpson, A. G. B. and Patterson, D. J. (1998). Stentor amethystinus (Ciliophora, Heterotrichida), a common member of fresh-water plankton in Australia. Records of the Australian Museum, 50: 211-216.
• Larsen, J. and Patterson, D. J. (1990). Some flagellates (Protista) from tropical marine sediments. Journal of Natural History, 24: 801-937.
• Lee, W. J. and Patterson, D. J. (1998). Diversity and geographic distribution of free-living heterotrophic flagellates - analysis by PRIMER. Protist, 149: 229-243. Update
• Lee, W. J. and Patterson, D. J. (2000). Are communities of heterotrophic flagellates determined by their geography ? In: (eds) W. Ponder and D. Lunney, The Other 99% - The Conservation and Biodiversity of InvertebratesAustralian Zoologist, Transactions of the Royal Zoological Society of New South Wales, pp 232-235.
• Lee, W. J. and Patterson, D.J. (1999). Are communities of heterotrophic flagellates determined by their geography ? In: (eds) W. Ponder and D. Lunney, The Other 99% - The Conservation and Biodiversity of InvertebratesAustralian Zoologist, Transactions of the Royal Zoological Society of New South Wales, pp 232-235.
• Lee, W. J. and Patterson, D. J. (2000). Heterotrophic flagellates (protista) from marine sediments of Botany Bay, Australia. Journal of Natural History, 34: 483-562.
• Lee, W. J. and Patterson, D.J. 2002. Abundance and biomass of heterotrophic flagellates, and factors controlling their abundance and distribution in sediments of Botany bay. Microbial Ecology, 43: 467-481. 128.
• Lee, W.J. and Patterson, D.J. 2002. Optimising the extraction of bacteria, heterotrophic protists and diatoms, and estimating their abundance and biomass from intertidal sandy sediments. Journal of the Korean Society of Oceanography, 37: 58-65. 129.
• Lee, W. J., Blackmore, R. Patterson, D. J. (1999). Australian records of two lesser known genera of heterotrophic euglenids - Chasmostoma Massart, 1920 and Jenningsia Schaeffer, 1918. Protistology.1: 10-16
• Leipe, D. D, Wainright, P.O., Gunderson, J.H., Porter, D., Patterson, D.J., Valois, F., Himmerich, S. and Sogin, M.L. (1994). The stramenopiles from a molecular perspective: small subunit rDNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycologia 33: 369-377.
• Mikrjukov, K. A. and Patterson, D. J. (2001). Taxonomy and phylogeny of Heliozoa. III. Actinophryids. Acta. Protozool., 40: 3-25.
• Mikrjukov, K. A., Patterson, D. J. and Siemensma, F.J. (2002). Phylum Heliozoa In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 860-871.
• Mulisch, M. and Patterson, D. J. (1983). Eufolliculina uhligi n. sp., a new member of the Folliculinidae (Ciliophora), with some comments on the genus Eufolliculina hadzi, 1951. Protistologica 19: 235-243.
• Murray, S. and Patterson, D.J. (2002). The benthic dinoflagellate genus Amphidinium in south-eastern Australian waters, including three new species. Eur. J. Phycol. 37: 279-298.
• Murray, S. and Patterson, D. J. (2002). Amphidiniopsis korewalensis sp. nov., a new heterotrophic benthic dinoflagellate. Phycologia, 41: 382-388. (pdf version)
• Murray, S. and Patterson, D. J. (in press). Cabra matta, gen. nov. sp. nov., a new heterotrophic benthic dinoflagellate. Eur. J. Phycol.
• O'Kelly, C.J. and Patterson, D.J. (1996) The flagellar apparatus of Cafeteria roenbergensis Fenchel & Patterson, 1988. Europ. J. Protistol. 32, 216-226.
• Patterson, D. J. and Burford, M. A. 2001. A guide to the protozoa of marine aquaculture ponds. CSIRO Publishing, Collingwood, Australia. ISBN 0 643 06669 1. 113.
• Patterson, D. J. (1978). Kahl's keys to the ciliates. University of Bristol. (Translation).
• Patterson, D. J. (1979). On the organization and classification of the protozoon Actinophrys sol Ehrenberg, 1830. Microbios 26: 165-208.
• Patterson, D. J. (1980). Contractile vacuoles and associated structures: Their organization and function. Biol. Revs. 55: 1-46.
• Patterson, D. J. (1983). On the organization of the naked filose amoeba Nuclearia moebiusi Frenzel, 1897 (Sarcodina, Filosea) and its implications. Journal of Protozoology 30: 301-307.
• Patterson, D. J. (1984). The genus Nuclearia (Sarcodina, Filosea): species composition and diagnoses of the taxa. Archiv für Protistenkunde 128: 127-139
• Patterson, D. J. (1985) (appeared 1986). The fine structure of Opalina ranarum (family Opalinidae): opalinid phylogeny and classification. Protistologica 21:413-428.
• Patterson, D. J. (1985). On the organization and affinities of the amoeba, Pompholyxophrys punicea Archer, based on ultrastructural examination of individual cells from wild material. Journal of Protozoology 32: 241-246.
• Patterson, D. J. (1989). Stramenopiles: chromophytes from a protistological perspective. In: Green, J.C., Leadbeater, B.S.C. & Diver, W. L. 1989. The chromophyte algae: problems and perspectives. Clarendon Press, Oxford. 357-379.
• Patterson, D. J. (1990). Jakoba libera (Ruinen, 1938), a heterotrophic flagellate from deep oceanic sediments. Journal of the Marine Biological Association, U.K. 70: 381-393.
• Patterson, D. J. (1993). The current status of the free-living heterotrophic flagellates. Journal of Eukaryotic Microbiology 40: 606-609.
• Patterson, D. J. (1994). Protozoa, Evolution and Classification. Progress in Protozoology, Proceedings of the IX International Congress of Protozoology, Fischer Verlag, Stuttgart, 1-14.
• Patterson, D. J. (1996). Free-living Freshwater Protozoa, Manson; Wiley and University of New South Wales Presses. (details)
• Patterson, D. J. (1997) Morphology and Natural habitats (Chapter) Exploring the World Using Protozoa. (Anderson, O.R. and Druger, M. National Sciences Teachers Association.
• Patterson, D. J. (1999). The diversity of eukaryotes. American Naturalist 154: S96-S124.available here
• Patterson, D. J. (2002). Changing views of protistan systematics: the taxonomy of protozoa - an overview. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 2-9.
• Patterson, D. J. (2002). Residual heterotrophic stramenopiles. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 751-754.
• Patterson, D. J. (2003). Progressing towards a biological names register. Nature, 422: 661 (pdf version)
• Patterson, D. J. and Brugerolle, G. (1988). The ultrastructural identity of Stephanopogon apogon and the relatedness of the genus to other kinds of protists. Europeab Journal of Protistology, 23: 279-290.
• Patterson, D. J. and Burford, M. A. (2001). A guide to the protozoa of marine aquaculture ponds. CSIRO Publishing, Collingwood, Australia. ISBN 0 643 06669 1.
•   Patterson, D. J. and Delvinquier, B. L. J. (1990). The fine structure of the cortex of the protist Protoopalina australis (Slopalinida, Op
• Patterson, D. J. and Dürrschmidt, M. (1988). The formation of siliceous scales by Raphidiophrys ambigua (Protista, Centroheliozoa). Journal of Cell Science, 91: 33-39.
• Patterson, D. J. and Fenchel, T. (1985). Insights into the evolution of heliozoa (Protozoa, Sarcodina) as provided by ultrastructural studies on a new species of flagellate from the genus Pteridomonas. Biolological Journal of the Linnean Society 34: 381-403.
• Patterson, D. J. and Fenchel, T. (1990). Massisteria marina, a widespread and abundant bacterivorous protist associated with marine detritus. Marine Ecology Progress Series, 62: 11-19.
• Patterson, D. J. and Larsen, J. (1991). Nomenclatural problems with protists. Regnum Vegetabile, 123: 197-208
• Patterson, D. J. and Larsen, J. (1992). A perspective on protistan nomenclature. Journal of Protozoology, 39, 125-131.
• Patterson, D. J. and Larsen, J. (eds) (1991). The Biology of Free-Living Heterotrophic Flagellates, Clarendon Press, Oxford.
• Patterson, D. J. and Lee, W.J. (2000). Geographic distribution and diversity of free-living heterotrophic flagellates. In: 'The Flagellates" Eds Green, J. and Leadbeater, B.S.C. Taylor and Francis, 269-287.
• Patterson, D. J. Nygaard, K., Steinberg, G. and Turley, C.M. (1992). Heterotrophic flagellates and other protists associated with detritus in the mid North Atlantic. Journal of the Marine Biological Association, UK,. 73: 67-95
• Patterson, D. J., Larsen, J. and Corliss, J. O. (1989). The ecology of heterotrophic flagellates and ciliates living in marine sediments. Progress in Protistology, 3: 185-277.
• Patterson, D. J., Rogerson, A., and Vørs, N. (2002). Class Heterolobosea. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 1104-1111.
• Patterson, D. J., Simpson, A. G. B. and Rogerson, A. (2002). Amoebae of uncertain affinities In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 804-827.
• Patterson, D. J. and Simpson, A. G. B. (1996) Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. European Journal of Protistology.32, 423-448.
• Patterson, D. J., Simpson A.G.B. and Weerakoon, N. (1999). Free-living flagellates from anoxic habitats and the assembly of the eukaryotic cell. Biological Bulletin. 196, 381-384.
• Patterson, D. J., Surek, B. and Melkonian, M. (1987). The ultrastructure of Vampyrellidium perforans Surek & Melkonian and its taxonomic position among the naked filose amoebae. Journal of Protozoology, 34: 63-67.
• Patterson, D. J., Vørs, N., Simpson, A. G. B. and O'Kelly, C.J. (2002). Residual free-living and predatory heterotrophic flagellates. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 1302 - 1328.
• Rogerson, A. & Patterson, D. J. (2002). The naked ramicristate amoebae (Gymnamoebae) In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 1023 - 1053.
• Simpson, A. G. B., Bernard, C. and Patterson, D. J. (2000) The ultrastructure of Trimastix marina Kent, 1880 (Eukaryota), an excavate flagellate. European Journal of Protistology 36: 229-252.
• Simpson, A. G. B., Bernard, C., Fenchel, T. and Patterson, D. J. (1997). The organisation of Mastigamoeba schizophrenia n. sp.: more evidence of ultrastructural idiosyncrasy and simplicity in pelobiont protists. European Journal of Protistology.
• Simpson A.G.B. and Patterson, D.J. (1999) The ultrastructure of Carpediemonas membranifera: (Eukaryota), with reference to the excavate hypothesis. European Journal of Protistology, 35: 353-370.
• Simpson, A. G. B. and Patterson, D. J. (1996). Ultrastructure and identification of the predatory flagellate Colpodella pugnax Cienkowski (Apicomplexa) with a description of Colpodella turpis (n. sp.) and a review of the genus. Systematic Parasitology 33:187-198.
• Simpson, A. G. B. and Patterson, D.J. (2001). On core jakobids and excavate taxa: the ultrastructure of Jakoba incarcerata. J. Euk. Microbiol., 48: 480-492.Simpson, A. G. B. and Patterson, D. J. (2002). Family Colpodellidae Simpson & Patterson, 19965. In Lee, J.J., Leedale, G.F. and Bradbury, P. (eds) An Illustrated Guide to the Protozoa, 2nd edition, Society of Protozoologists, Lawrence, Kansas. pp. 370-371.
• Simpson, A. G. B., Van Den Hoff, J., Bernard, C., Burton, H. and Patterson, D. J. (1996/97) The Ultrastructure and Systematic Position of the Euglenozoon Postgaardi mariagerensis. Arch. protistenkd. 147: 213-225.
• Simpson, A. G. B., Roger, A. J., Silberman, J. D., Leipe, D. D., Edgcomb, V. P., Jermiin, L. A., Patterson, D. J. and Sogin, M. L. (2002). Evolutionary history of "early diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia. Molecular Biology and Evolution, 19: 1782-1791. download pdf version
• Smith, R. McK. and Patterson, D. J. (1986). Analyses of heliozoan inter-relationships: an example of the potentials and limitations of the ultrastructural approaches to the study of protistan phylogeny. Proceedings of the Royal Society of London B, 227:325-366.
• Tong, S., Nygaard, K., Bernard, C., Vors, N. and Patterson, D. J (1998). Heterotrophic Flagellates from the water column in Port Jackson, Sydney, Australia. Europe. J. Protistol. 34, 164-194
• Tong, S., Vors, N. and Patterson, D.J. (1997) Heterotrophic flagellates, centrohelid heliozoa and filose amoebae from marine and freshwater sites in the Antarctic. Polar Biol 18:91-106.
• Turley, C. M., Lochte, K., and Patterson, D. J. (1988). A barophilic flagellate isolated from 4500 m in the mid-North Atlantic. Deep-Sea Research, 35: 1079-1092.
• Verhagen, F.J.M., Zölffel, M., Brugerolle, G. and Patterson, D.J. (1993). Adriamonas peritocrescens gen. nov. sp. nov., a new free-living soil flagellate (Protista, Pseudodendromonadidae incertae sedis). European Journal of Protistology, 30: 295-308.
• Wainright, P. O., Patterson, D. J. and Sogin, M. L. (1994). Monophyletic origin of animals: a shared ancestry with fungi. pp 39-53 in Farmborough, D.M. (ed) Molecular Evolution of Physiological Processes, Society of General Physiologists Series, No. 49; Rockefeller Press, New York.
• Walker, G, Simpson, A.G.B. Edgcomb, V., Sogin, M. L. and Patterson, D.J. 2001. Ultrastructural identities of Mastigamoeba Protozoologica punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista). Europ. J. Protistol. 37, 25-49.
• Walker, G, Simpson, A.G.B. Edgcomb, V., Sogin, M. L. and Patterson, D.J. 2001. Ultrastructural identities of Mastigamoeba punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista). Europ. J. Protistol. 37, 25-49.
• Weerakoon N.D., Harper J.D.I., Simpson, A.G.B. and Patterson, D.J. (1999). Immunolocalisation of centrin and microtubules in the amitochondriate protist, Chilomastix cuspidata (Retortamonadida). Protoplasma.210: 75-84.